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A Review of Biotic Interactions and Taxon Names Found in fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics hash://md5/e78ebb6deef2e7f0f711b2fac9edfbad

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environment and energy

Record type:

dataset
Creator:
EltonNomerPreston
Publisher:
Zenodo
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Introduction Data Review and Archive Data review and archiving can be a time-consuming process, especially when done manually. This review report aims to help facilitate both activities. It automates the archiving of datasets, including Darwin Core archives, and is a citable backup of a version of the dataset. Additionally, an automatic review of species interaction claims made in the dataset is generated and registered with Global Biotic Interactions (J. H. Poelen, Simons, and Mungall 2014). This review includes summary statistics about, and observations about, the dataset under review: Muñoz, G., Trøjelsgaard, K., & W.D. Kissling. 2018. A synthesis of animal-mediated seed dispersal of palms reveals distinct biogeographic differences in species interactions. Journal of Biogeography (in progress) github.com 2025-04-04T23:04:08.703Z hash://md5/e78ebb6deef2e7f0f711b2fac9edfbad For additional metadata related to this dataset, please visit github.com and inspect associated metadata files including, but not limited to, README.md, eml.xml, and/or globi.json. Methods The review is performed through programmatic scripts that leverage tools like Preston (Elliott et al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer (Salim and Poelen 2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024) combined with third-party tools like grep, mlr, tail and head. Tools used in this review process tool name version preston 0.10.1 elton 0.15.9 nomer 0.5.13 globinizer 0.4.0 mlr 6.0.0 jq 1.6 yq 4.25.3 pandoc 3.1.6.1 The review process can be described in the form of the script below 1. # get versioned copy of the dataset (size approx. 357KiB) under review elton pull fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics # generate review notes elton review fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics\ > review.tsv # export indexed interaction records elton interactions fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics\ > interactions.tsv # export names and align them with the Catalogue of Life using Nomer elton names fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics\ | nomer append col\ > name-alignment.tsv or visually, in a process diagram. Review Process Overview You can find a copy of the full review script at check-data.sh. See also GitHub and Codeberg. Results In the following sections, the results of the review are summarized 2. Then, links to the detailed review reports are provided. Files The following files are produced in this review: filename description biblio.bib list of bibliographic reference of this review check-dataset.sh data review workflow/process as expressed in a bash script data.zip a versioned Preston (Elliott et al. 2025) archive of the data under review HEAD the digital signature of the data under review index.docx review in MS Word format index.html review in HTML format index.md review in Pandoc markdown format index.pdf review in PDF format indexed-citations.csv.gz list of distinct reference citations for reviewed species interaction claims in gzipped comma-separated values file format indexed-citations.html.gz list of distinct reference citations for reviewed species interactions claims in gzipped html file format indexed-citations.tsv.gz list of distinct reference citations for reviewed species interaction claims in gzipped tab-separated values format indexed-interactions-col-family-col-family.svg network diagram showing the taxon family to taxon family interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions-col-kingdom-col-kingdom.svg network diagram showing the taxon kingdom to taxon kingom interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions.csv.gz species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions.html.gz species interaction claims indexed from the dataset under review in gzipped html format indexed-interactions.tsv.gz species interaction claims indexed from the dataset under review in gzipped tab-separated values format indexed-interactions-sample.csv list of species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions-sample.html first 500 species interaction claims indexed from the dataset under review in html format indexed-interactions-sample.tsv first 500 species interaction claims indexed from the dataset under review in tab-separated values format indexed-names.csv.gz taxonomic names indexed from the dataset under review in gzipped comma-separated values format indexed-names.html.gz taxonomic names found in the dataset under review in gzipped html format indexed-names.tsv.gz taxonomic names found in the dataset under review in gzipped tab-separated values format indexed-names-resolved-col.csv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-col.html.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-col.tsv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-discoverlife.csv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-discoverlife.html.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-discoverlife.tsv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-gbif.csv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-gbif.html.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-gbif.tsv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-itis.csv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-itis.html.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-itis.tsv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-mdd.csv.gz taxonomic names found in the dataset under review aligned with the Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-mdd.html.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-mdd.tsv.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-ncbi.csv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-ncbi.html.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-ncbi.tsv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-pbdb.csv.gz taxonomic names found in the dataset under review aligned with the Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-pbdb.html.gz taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-pbdb.tsv.gz taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-tpt.csv.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-tpt.html.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-tpt.tsv.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-wfo.csv.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-wfo.html.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-wfo.tsv.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-worms.csv.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-worms.html.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-worms.tsv.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-sample.csv first 500 taxonomic names found in the dataset under review in comma-separated values format indexed-names-sample.html first 500 taxonomic names found in the dataset under review in html format indexed-names-sample.tsv first 500 taxonomic names found in the dataset under review in tab-separated values format interaction.svg diagram summarizing the data model used to index species interaction claims nanopub-sample.trig first 500 species interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014) nanopub.trig.gz species interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014) process.svg diagram summarizing the data review processing workflow prov.nq origin of the dataset under review as expressed in rdf/nquads review.csv.gz review notes associated with the dataset under review in gzipped comma-separated values format review.html.gz review notes associated with the dataset under review in gzipped html format review.tsv.gz review notes associated with the dataset under review in gzipped tab-separated values format review-sample.csv first 500 review notes associated with the dataset under review in comma-separated values format review-sample.html first 500 review notes associated with the dataset under review in html format review-sample.tsv first 500 review notes associated with the dataset under review in tab-separated values format review.svg a review badge generated as part of the dataset review process zenodo.json metadata of this review expressed in Zenodo record metadata Archived Dataset Note that data.zip file in this archive contains the complete, unmodified archived dataset under review. Biotic Interactions Biotic Interaction Data Model In this review, biotic interactions (or biotic associations) are modeled as a primary (aka subject, source) organism interacting with an associate (aka object, target) organism. The dataset under review classified the primary/associate organisms with specific taxa. The primary and associate organisms The kind of interaction is documented as an interaction type. The dataset under review, named fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics, has fingerprint hash://md5/e78ebb6deef2e7f0f711b2fac9edfbad, is 357KiB in size and contains 1,175 interaction with 1 unique type of association (e.g., eats) between 342 primary taxa (e.g., Pecari tajacu) and 126 associated taxa (e.g., Euterpe edulis). An exhaustive list of indexed interaction claims can be found in gzipped csv and tsv archives. To facilitate discovery, a preview of claims available in the gzipped html page at indexed-interactions.html.gz are shown below. The exhaustive list was used to create the following data summaries below. Sample of Indexed Interaction Claims sourceTaxonName interactionTypeName targetTaxonName referenceCitation Lepilemur dorsalis eats Dypsis madagascariensis Zona, S. & Henderson, A. (1989) A review of animal mediated seed dispersal of palms. Selbyana, 11, 6-21. Online Update 2006 ((virtualherbarium.org). Hapalemur occidentalis eats Dypsis madagascariensis Zona, S. & Henderson, A. (1989) A review of animal mediated seed dispersal of palms. Selbyana, 11, 6-21. Online Update 2006 ((virtualherbarium.org). Eulemur macaco eats Dypsis madagascariensis Zona, S. & Henderson, A. (1989) A review of animal mediated seed dispersal of palms. Selbyana, 11, 6-21. Online Update 2006 ((virtualherbarium.org). Eulemur macaco eats Dypsis madagascariensis Birkinshaw, C. . 2001. Fruit charateristics of species dispersed by black lemur (Eulemur macaco) in the Lokobe forest Madagascar. Biotropica. 478-486 Most Frequently Mentioned Interaction Types (up to 20 most frequent) interactionTypeName count eats 1175 Most Frequently Mentioned Primary Taxa (up to 20 most frequent) sourceTaxonName count Pecari tajacu 54 Tayassu pecari 50 Tapirus terrestris 42 Dasyprocta punctata 34 Dasyprocta leporina 24 Cuniculus paca 23 Sciurus granatensis 22 Sapajus apella 19 Colossoma macropomum 18 Proechimys semispinosus 15 Heteromys desmarestianus 15 Ceratogymna atrata 14 Sciurus aestuans 12 Ateles belzebuth 12 Anodorhynchus hyacinthinus 11 Ateles geoffroyi 11 Ara ararauna 10 Piaractus brachypomus 10 Tapirus bairdii 9 Most Frequently Mentioned Associate Taxa (up to 20 most frequent) targetTaxonName count Euterpe edulis 125 Oenocarpus bataua 86 Syagrus romanzoffiana 85 Astrocaryum jauari 63 Mauritia flexuosa 55 Attalea maripa 53 Attalea butyracea 46 Astrocaryum standleyanum 44 Attalea phalerata 31 Astrocaryum murumuru 27 Phoenix reclinata 27 Elaeis guineensis 26 Acrocomia aculeata 23 Iriartea deltoidea 23 Astrocaryum mexicanum 22 Copernicia alba 21 Astrocaryum gratum 16 Socratea exorrhiza 16 Oenocarpus mapora 16 Most Frequent Interactions between Primary and Associate Taxa (up to 20 most frequent) sourceTaxonName interactionTypeName targetTaxonName count Dasyprocta punctata eats Astrocaryum standleyanum 12 Heteromys desmarestianus eats Astrocaryum mexicanum 11 Sciurus granatensis eats Attalea butyracea 9 Tapirus terrestris eats Attalea maripa 9 Proechimys semispinosus eats Astrocaryum standleyanum 8 Pecari tajacu eats Attalea maripa 8 Pecari tajacu eats Mauritia flexuosa 7 Tayassu pecari eats Mauritia flexuosa 7 Tapirus terrestris eats Syagrus romanzoffiana 7 Turdus albicollis eats Euterpe edulis 7 Proechimys semispinosus eats Attalea butyracea 6 Dasyprocta punctata eats Attalea butyracea 6 Sciurus granatensis eats Astrocaryum standleyanum 6 Dasyprocta leporina eats Attalea maripa 6 Tayassu pecari eats Oenocarpus bataua 6 Sciurus ingrami eats Syagrus romanzoffiana 6 Tayassu pecari eats Syagrus romanzoffiana 6 Turdus flavipes eats Euterpe edulis 6 Pteroglossus bailloni eats Euterpe edulis 6 Interaction Networks The figures below provide a graph view on the dataset under review. The first shows a summary network on the kingdom level, and the second shows how interactions on the family level. It is important to note that both network graphs were first aligned taxonomically using the Catalogue of Life. Please refer to the original (or verbatim) taxonomic names for a more original view on the interaction data. Interactions on taxonomic kingdom rank as interpreted by the Catalogue of Life download svg Interactions on the taxonomic family rank as interpreted by the Catalogue of Life. download svg You can download the indexed dataset under review at indexed-interactions.csv.gz. A tab-separated file can be found at indexed-interactions.tsv.gz Learn more about the structure of this download at GloBI website, by opening a GitHub issue, or by sending an email. Another way to discover the dataset under review is by searching for it on the GloBI website. Taxonomic Alignment As part of the review, all names are aligned against various name catalogs (e.g., col, ncbi, discoverlife, gbif, itis, wfo, mdd, tpt, pbdb, and worms). These alignments can help review name usage or aid in selecting of a suitable taxonomic name resource. Sample of Name Alignments providedName relationName resolvedCatalogName resolvedName Acoelorrhaphe wrightii NONE col Acoelorrhaphe wrightii Acridotheres tristis HAS_ACCEPTED_NAME col Acridotheres tristis Acrocomia aculeata HAS_ACCEPTED_NAME col Acrocomia aculeata Aiphanes horrida HAS_ACCEPTED_NAME col Aiphanes horrida Distribution of Taxonomic Ranks of Aligned Names by Catalog. Names that were not aligned with a catalog are counted as NAs. So, the total number of unaligned names for a catalog will be listed in their NA row. resolvedCatalogName resolvedRank count col NA 14 col genus 9 col species 441 col subspecies 4 col variety 1 discoverlife NA 468 gbif NA 8 gbif genus 9 gbif species 446 gbif subspecies 5 gbif variety 1 itis NA 102 itis genus 9 itis species 353 itis subspecies 4 mdd NA 468 ncbi NA 23 ncbi genus 9 ncbi species 435 ncbi subspecies 1 pbdb NA 311 pbdb genus 2 pbdb species 155 tpt NA 195 tpt genus 1 tpt species 272 wfo NA 344 wfo species 124 worms NA 398 worms genus 8 worms species 62 Name relationship types per catalog. Name relationship type "NONE" means that a name was not recognized by the associated catalog. "SAME_AS" indicates either a "HAS_ACCEPTED_NAME" or "SYNONYM_OF" name relationship type. We recognize that "SYNONYM_OF" encompasses many types of nomenclatural synonymies resolvedCatalogName relationName count col NONE 14 col HAS_ACCEPTED_NAME 429 col SYNONYM_OF 34 discoverlife NONE 468 gbif SYNONYM_OF 56 gbif HAS_ACCEPTED_NAME 455 gbif NONE 8 itis SYNONYM_OF 24 itis HAS_ACCEPTED_NAME 346 itis NONE 102 mdd NONE 341 mdd HAS_ACCEPTED_NAME 127 ncbi SYNONYM_OF 23 ncbi SAME_AS 422 ncbi NONE 23 pbdb NONE 311 pbdb HAS_ACCEPTED_NAME 152 pbdb SYNONYM_OF 5 tpt NONE 195 tpt HAS_ACCEPTED_NAME 271 tpt SYNONYM_OF 2 wfo NONE 344 wfo HAS_ACCEPTED_NAME 120 wfo SYNONYM_OF 3 wfo HAS_UNCHECKED_NAME 2 worms NONE 398 worms HAS_ACCEPTED_NAME 67 worms SYNONYM_OF 3 List of Available Name Alignment Reports catalog name alignment results col associated names alignments report in gzipped html, csv, and tsv) ncbi associated names alignments report in gzipped html, csv, and tsv) discoverlife associated names alignments report in gzipped html, csv, and tsv) gbif associated names alignments report in gzipped html, csv, and tsv) itis associated names alignments report in gzipped html, csv, and tsv) wfo associated names alignments report in gzipped html, csv, and tsv) mdd associated names alignments report in gzipped html, csv, and tsv) tpt associated names alignments report in gzipped html, csv, and tsv) pbdb associated names alignments report in gzipped html, csv, and tsv) worms associated names alignments report in gzipped html, csv, and tsv) Additional Reviews Elton, Nomer, and other tools may have difficulties interpreting existing species interaction datasets. Or, they may misbehave, or otherwise show unexpected behavior. As part of the review process, detailed review notes are kept that document possibly misbehaving, or confused, review bots. An sample of review notes associated with this review can be found below. First few lines in the review notes. reviewDate reviewCommentType reviewComment 2025-04-10T03:10:14Z summary github.com 2025-04-10T03:10:14Z summary 1175 interaction(s) 2025-04-10T03:10:14Z summary 0 note(s) 2025-04-10T03:10:14Z summary 1175 info(s) In addition, you can find the most frequently occurring notes in the table below. : Most frequently occurring review notes, if any. For additional information on review notes, please have a look at the first 500 Review Notes in html format or the download full gzipped csv or tsv archives. GloBI Review Badge As part of the review, a review badge is generated. This review badge can be included in webpages to indicate the review status of the dataset under review. Picture of a GloBI Review Badge 3 Note that if the badge is green, no review notes were generated. If the badge is yellow, the review bots may need some help with interpreting the species interaction data. GloBI Index Badge If the dataset under review has been registered with GloBI, and has been succesfully indexed by GloBI, the GloBI Index Status Badge will turn green. This means that the dataset under review was indexed by GloBI and is available through GloBI services and derived data products. Picture of a GloBI Index Badge 4 If you'd like to keep track of reviews or index status of the dataset under review, please visit GloBI's dataset index 5 for badge examples. Discussion This review and archive provides a means of creating citable versions of datasets that change frequently. This may be useful for dataset managers, including natural history collection data managers, as a backup archive of a shared Darwin Core archive. It also serves as a means of creating a trackable citation for the dataset in an automated way, while also including some information about the contents of the dataset. This review aims to provide a perspective on the dataset to aid in understanding of species interaction claims discovered. However, it is important to note that this review does not assess the quality of the dataset. Instead, it serves as an indication of the open-ness6 and FAIRness (Wilkinson et al. 2016; Trekels et al. 2023) of the dataset: to perform this review, the data was likely openly available, Findable, Accessible, Interoperable and Reusable. The current Open-FAIR assessment is qualitative, and a more quantitative approach can be implemented with specified measurement units. This report also showcases the reuse of machine-actionable (meta)data, something highly recommended by the FAIR Data Principles (Wilkinson et al. 2016). Making (meta)data machine-actionable enables more precise procesing by computers, enabling even naive review bots like Nomer and Elton to interpret the data effectively. This capability is crucial for not just automating the generation of reports, but also for facilitating seamless data exchanges, promoting interoperability. Acknowledgements We thank the many humans that created us and those who created and maintained the data, software and other intellectual resources that were used for producing this review. In addition, we are grateful for the natural resources providing the basis for these human and bot activities. Also, thanks to github.com for helping improve the layout of the review tables. Author contributions Nomer was responsible for name alignments. Elton carried out dataset extraction, and generated the review notes. Preston tracked, versioned, and packaged, the dataset under review. References Elliott, Michael, Jorrit Poelen, Icaro Alzuru, Emilio Berti, and partha04patel. 2025. "Bio-Guoda/Preston: 0.10.5." Zenodo. doi.org. ICZN. 1999. "International Code of Zoological Nomenclature." The International Trust for Zoological Nomenclature, London, UK. iczn.org. Kuhn, Tobias, and Michel Dumontier. 2014. "Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data." In The Semantic Web: Trends and Challenges, edited by Valentina Presutti, Claudia d'Amato, Fabien Gandon, Mathieu d'Aquin, Steffen Staab, and Anna Tordai, 395–410. Cham: Springer International Publishing. Kuhn, Tobias, Jorrit Poelen, and Katrin Leinweber. 2025. "Globalbioticinteractions/Elton: 0.15.1." Zenodo. doi.org. Poelen, Jorrit H. (ed.). 2024. "Nomer Corpus of Taxonomic Resources Hash://Sha256/ B60c0d25a16ae77b24305782017b1a270b79b5d1746f832650 F2027ba536e276 Hash://Md5/17f1363a277ee0e4ecaf1b91c665e47e." Zenodo. doi.org. Poelen, Jorrit H., James D. Simons, and Chris J. Mungall. 2014. "Global Biotic Interactions: An Open Infrastructure to Share and Analyze Species-Interaction Datasets." Ecological Informatics 24 (November): 148–59. doi.org. Poelen, Jorrit, Katja Seltmann, and Daniel Mietchen. 2024. "Globalbioticinteractions/Globinizer: 0.4.0." Zenodo. doi.org. Salim, José Augusto, and Jorrit Poelen. 2025. "Globalbioticinteractions/Nomer: 0.5.15." Zenodo. doi.org. Trekels, Maarten, Debora Pignatari Drucker, José Augusto Salim, Jeff Ollerton, Jorrit Poelen, Filipi Miranda Soares, Max Rünzel, Muo Kasina, Quentin Groom, and Mariano Devoto. 2023. "WorldFAIR Project (D10.1) Agriculture-related pollinator data standards use cases report." Zenodo. doi.org. Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al. 2016. "The FAIR Guiding Principles for Scientific Data Management and Stewardship." Scientific Data 3 (1). doi.org. Note that you have to first get the data (e.g., via elton pull fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics) before being able to generate reviews (e.g., elton review fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics), extract interaction claims (e.g., elton interactions fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics), or list taxonomic names (e.g., elton names fgabriel1891/Palm-Frugivore_Interactions_Neo-Afrotropics)↩︎ Disclaimer: The results in this review should be considered friendly, yet naive, notes from an unsophisticated robot. Please keep that in mind when considering the review results.↩︎ Up-to-date status of the GloBI Review Badge can be retrieved from the GloBI Review Depot↩︎ Up-to-date status of the GloBI Index Badge can be retrieved from GloBI's API↩︎ At time of writing (2025-04-10) the version of the GloBI dataset index was available at globalbioticinteractions.org According to opendefinition.org: "Open data is data that can be freely used, re-used and redistributed by anyone - subject only, at most, to the requirement to attribute and sharealike."↩︎

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