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Data for: A catalytic model for SARS-CoV-2 reinfections: Performing simulation-based validation and extending the model to include nth infections

Domain:

healthcare

Record type:

datasetsoftware
Creator:
Lombard, Belindavan Schalkwyk, CariPul
Editor:
van Schalkwyk, CariPul
Publisher:
Zenodo
Host:avatar
For code and more details see: inf_for_sbv.RDS - simluated timeseries of primary infections used in the simulation-based validation of reinfections. inf_for_sbv_third.RDS - simluated timeseries of primary infections used in the simulation-based validation of third infections. 3_posterior_90_null_correctdata.RData - posterior samples from the MCMC fitting procedure (as used in the manuscript) when not considering a second lambda parameter (to third infections) 3_posterior_90_null_l2_correctdata.RData - posterior samples from the MCMC fitting procedure (as used in the manuscript) when considering a second lambda parameter (to third infections) 3_sim_90_null_correctdata.RDS - simulation results when not considering a second lambda parameter for third infections (as used in the manuscript) 3_sim_90_null_l2_correctdata.RDS - simulation results when considering a second lambda parameter for third infections (as used in the manuscript) {"references": ["Pulliam JRC, van Schalkwyk C, Govender N, von Gottberg A, Cohen C, Groome MJ, Dushoff J, Mlisana K, Moultrie H. Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa. Science. 2022 May 6;376(6593):eabn4947. doi: 10.1126/science.abn4947. Epub 2022 May 6. PMID: 35289632; PMCID: PMC8995029."]}

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Licenses

Creative Commons Attribution 4.0 Internationalhttps://creativecommons.org/licenses/by/4.0/legalcodeOpen Accessinfo:eu-repo/semantics/openAccess

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This release is associated with Version 3 of the following preprint:

Pul