Data from: Development of Diversity Arrays Technology markers as a tool for rapid genomic assessment in Nile tilapia, Oreochromis niloticus

Domain:

agriculture

Record type:

dataset

Creator:

LinKilBen

Publisher:

Dry

Host:

The development of genomic markers is described for Nile tilapia, Oreochromis niloticus, using the Diversity Arrays Technology (DArT) genotype-by-sequencing platform. A total of 13 215 single nucleotide polymorphism (SNP) markers and 12 490 silicoDArT (dominant) markers were identified from broodstock of two selective breeding programs [Genetically Improved Farmed Tilapia (GIFT) strain from Malaysia and the Abbassa strain from Egypt]. Over 10 000 SNPs were polymorphic in either strain, and 2985 and 3087 showed strain-specific polymorphisms for the GIFT and Abbassa strains respectively. We demonstrate the potential utility of these markers for rapid genomic screening and use in breeding programs. SNP genotypes, silicoDArT genotypes, and respective metadata of GIFT and Abbassa strains of Nile tilapiaData file containing 13,215 SNP and 12,490 silicoDArT genotype scores and respective marker sequence and metadata information for 188 Nile tilapia (Oreochromis niloticus). Samples are taken from the GIFT strain and the Abbassa strain selective breeding program nucleus populations managed and run by WorldFish in Malaysia and Egypt, respectively.DRYAD-Report-DTi15-1800-recoded.xlsx

Visit

doi.org datadryad.org

Licenses

Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode

Data from: Genetic diversity of Nile tilapia (Oreochromis niloticus) throughout West Africa

Nile tilapia (Oreochromis niloticus) is a globally significant aquacultu

Assessment of genetic variations of Nile Tilapia (Oreochromis niloticus L.) in the Volta Lake of Ghana using microsatellite markers

Replication data for: Domestication in Aquaculture Fishes- Elucidating the Genetic Consequences in Nile Tilapia (Oreochromis niloticus)

A growing human population combined with a higher per capita consumption of fish has resulted in a g

Replication data for: Comparing genomic signatures of selection between the Abbassa Strain and eight wild populations of Nile tilapia (Oreochromis niloticus) in Egypt

Domestication to captive rearing conditions, along with targeted selective breeding have genetic con

Food and Feeding Biology of Nile Tilapia (Oreochromis niloticus) in Lake Langeno, Ethiopia

This study aimed to investigate the natural feeding behavior of Nile tilapia in Lake Langeno, Ethiop

Health Risk Assessment and Levels of Heavy Metals in Farmed Nile Tilapia (Oreochromis niloticus) from the Volta Basin of Ghana

Heavy metals (Pb, Cd, As, Mn, Fe, Zn, Cu, Ni, and Cr) are some of the most toxic elements that can b