AaronNwana/FE-2024-Ghana-examples

# FE-2024-examples Example scripts for 2024 faculty enrichment program in applied malaria modeling at University of Health and Allied Sciences, Ghana in collaboration with Northwestern University. ⚠️ - Tips ❓ - Self-Check Questions ➕ - Bonus Exercises ### Technical track (EMOD) **Overview:** Exercises usually consist of a simulation and an analyzer of simulation outputs. In some weeks, additional scripts exist to prepare simulation inputs or generate additional outputs and plots, or for model calibration as described in the instructions for the respective weeks. **Supplied scripts & checking results:** A few primary scripts are provided at the main level of this repository including running examples and analyzers. Most of the work for this course will be done by you building your own scripts based on the instructions with the help of these scripts. For each week, suggested simulation scripts for comparison or help during the exercise are provided in the respective week's solution scripts folder. There is also an analyzer collection file in the solutions scripts that includes many commonly used analyzers that you may want to explore in more depth for your project. *Note: if you use an analyzer from the collection, be sure to add the right reporters to create the necessary output files.* **Prerequisites:** Running your scripts will require that the emodpy virtual environment is loaded and assumes files are run from a working directory set to where the script is located. Create this environment using these installation instructions. We recommend creating an "environments" folder in your home directory and creating the environment there. You will also need to configure your `.bashrc` file (located in your home directory). We use this file to automatically load modules, such as python, that are needed to run EMOD. We can include an alias for the virtual environment described above. The template, below, creates an alias command called `load_emodpy` that we can …