BawaMikael/covid_geomics-nigeria
Domain:
healthcareCreator:
Baw
Host:
COVID-19 Genomics Analysis – Northern Nigeria
Overview:
This project analyzes SARS-CoV-2 sequences from Bauchi, Kaduna, and Kano using Ion Torrent data.
Methods:
Quality control: FastQC
Variant calling: iVar
Lineage assignment: Pangolin
Phylogenetics: IQ-TREE
Data:
Sequences available on GISAID.
Author
Mika'il