dzhakparov/mlm-sos-all

MLM-SOS-ALL African Children Atopic Dermatitis Project # Protective and Susceptibility Clusters of Environmental Factors, Gene Expression, Antibody Responses, and Cytokines in Pediatric Atopic Dermatitis: Insights from Multi-Modal Data Integration ## Introduction This repository contains the analysis script for the publication "Protective and Susceptibility Clusters of Environmental Factors, Gene Expression, Antibody Responses, and Cytokines in Pediatric Atopic Dermatitis: Insights from Multi-Modal Data Integration". ## Repository Structure `01_clinical_data/` - Contains the analysis file for the clinical data analysis * Code is intended to be run from an `Apptainer` container to use all resources from the underlying server or system and to be shareable and executable on all systems. See details in the Apptainer-part of the help-section (Sphinx) * **Information for PyCharm Users**: If the paths to the files in folder 'src' and to config.py are not shown properly (red -> can't reference to them) * **delete content root**: File -> settings -> Project: sosall -> Project structure * **add content root**: File -> settings -> Project: sosall -> Project structure -> **+** '/home/schmidmarco/Documents/CODE/PROJECTS/sosall/data_preperation' * **More Information**: More information is available under the Sphinx documentation * **'sosall/docs/build/html/index.html'** `02_data_integration/` - Data Integration scripts with DIABLO with additional files for the data preparation. `03_supplementary/` - Contains additional evaluation scripts for the working model (M52) and other supplementary material analyses listed in the paper. ## Cloning the repository The project can be cloned from github.com with: ``` git clone github.com ```