shadowhgni/pathways_sustainable_intensification_Malawi

This repository reproduces the analysis associated with the manuscript entitled "Beyond Inputs: A network based meta analysis mapping pathways to Sustainable Intensification in Malawi's smallholder farming systems" # 🌍 Pathways to Sustainable Intensification in Malawi --- ## 📋 Overview This repository reproduces the analysis associated with the manuscript entitled **Beyond Inputs: A network based meta analysis mapping pathways to Sustainable Intensification in Malawi's smallholder farming systems**. The core is a network analysis of Mechanisms and their Attributes across five Sustainable Intensification (SI) domains. Read associated paper for further details. ## 📁 Project Structure ``` pathways_sustainable_intensification_Malawi/ ├── scripts/ │ ├── 1.Network_analysis.R # Bipartite network analysis per SI domain │ └── 2.Pathway_analysis.R # Tripartite network analysis, Sankey diagram, and more │ ├── data/ │ ├── raw/ # Data manually extracted from papers │ └── processed/ # Intermediary files │ ├── output/ # Main and supplementary figures including 3D interactive graphs │ └── README.md ``` ## 🔧 Installation and use Software requirements: R >= 4.3.3 A list of required R packages can be found at the top of each script. It is advised to fork the repository and clone it to a local computer where scripts can run smoothly. ## 📚 Citation If you use this code or data, please cite the original authors: > Chimonyo, V.G.P., Kalachi, R., Mhlanga, B., Hougni D.G.J.M., Nyagumbo, I., Manda, J., Homann-Kee Tui, S., Mponela, P., Chiduwa, M., Silberg, T.R. (2026). *Beyond Inputs: A network based meta analysis mapping pathways to Sustainable Intensification in Malawi's smallholder farming systems*. PLoS ONE. doi.org --- ## 📄 License Released under **CC BY 4.0** — Free to share and adapt with attribution. --- ## 📞 Contact * 🏢 **D. Hougni (CIMMYT):**        d.hougni@cgiar.org * 📧 **D. Hougni (Personal):**     shadowhgni@yahoo.fr * 🐛 **Issues:**       github.com …