MAF genome alignment from HD field samples of An gambiae complex

Multiple whole genome alignments of the field individual samples from the members of the Anopheles gambiae species complex (AGC) sequenced at high depth. This multiple genome alignment, in MAF format, include the haploid genome of one individual sequenced at high depth in each six genomes of the AGC. The An gambiae PEST reference assembly and two outgroup Pyretophorus species (An christyi and An epiroticus) are also included. MAF for each chromosome arm are provided. See the SOM, section S2.1 and S3.1 for a full description of the methodology.