Reconstructing an African haploid genome from the 18th century (all files)
Domain:
healthcareRecord type:
datasetsoftware
Creator:
JagGunS. Guð
Publisher:
fig
Host:
This file set presents supporting data for the paper titled "Reconstructing an African haploid genome from the 18th century". The dataset presents the data underpinning the reconstructed genome of Icelandic man Hans Jonatan (HJ), b. 1784, based on both single nucleotide polymorphism (SNP) chips and whole genome sequenced (WGS) of his descendants.
Datasets provided map the descendants in HJ's genealogy to identifiers used in the associated paper, African fragments in HJ descendants as determined by HAPMIX statistical software and the different African microarray SNP datasets used as reference populations to determine the origin of HJ’s haploid African genome.
Formats
Files are provided in either .xls, .pdf (both datasets) or .docx (figures) formats.
HAPMIX is an application for accurately inferring chromosomal segments of distinct ancestry in admixed populations, using dense genetic data. ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.
Datasets provided map the descendants in HJ's genealogy to identifiers used in the associated paper, African fragments in HJ descendants as determined by HAPMIX statistical software and the different African microarray SNP datasets used as reference populations to determine the origin of HJ’s haploid African genome.
Formats
Files are provided in either .xls, .pdf (both datasets) or .docx (figures) formats.
HAPMIX is an application for accurately inferring chromosomal segments of distinct ancestry in admixed populations, using dense genetic data. ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.