Additional file 2: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

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Figure S2. Detailed summary of whole genome sequence (WGS) data quality control of BijagĂłs Chlamydia trachomatis sequences. (PDF 76 kb)

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Medicine Microbiology FOS: Biological sciences Genetics Evolutionary Biology Ecology Biological Sciences not elsewhere classified Computational Biology

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Additional file 8: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severityAdditional file 12: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severityAdditional file 10: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severityAdditional file 3: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severityAdditional file 9: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severityPopulation-based analysis of ocular <i>Chlamydia trachomatis</i> in trachoma-endemic West African communities identifies genomic markers of disease severity

Additional file 8: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

Figure S8. Maximum likelihood reconstruction of phylogeny by polymorphic membrane protein (Pmp) gene

Additional file 12: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

Figure S12. European Nucleotide Archive (ENA) (European Bioinformatics Institute (EBI)) accession nu

Additional file 10: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

Figure S10. SNPs across the Chlamydia trachomatis genome associated with disease severity using perm

Additional file 3: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

Figure S3. R Script used for (A) tissue localization and (B) disease severity Chlamydia trachomatis

Additional file 9: of Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

Figure S9. Ocular localization-associated SNPs (p value <â 0.1). (PDF 150 kb)

Population-based analysis of ocular <i>Chlamydia trachomatis</i> in trachoma-endemic West African communities identifies genomic markers of disease severity

ABSTRACT Chlamydia trachomatis (