Data from: Genetic mapping and QTL analysis for peanut smut resistance
Domaine:
agricultureType de record:
dataset
Créateur:
US Nat
Éditeur:
ICP
Hôte:
This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus Thecaphora frezii. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible Arachis hypogaea subsp.hypogaea × resistant synthetic amphidiploid [(A. correntina × A. cardenasii) × A. batizocoi]⁴ˣ} and parental lines, generated with the Axiom_Arachis2 SNP array.
For more information about this dataset contact: Renee Arias: Renee.Arias@usda.gov or Alicia Massa: Alicia.Massa@usda.gov
Resources in this dataset:
Resource Title: RILs of the mapping population. File Name: RIL_population.JPG
Resource Title: RILs of the mapping population.
File Name: RIL_population.JPG
Resource Title: Data Dictionary. File Name: readme.txt
Resource Title: Data Dictionary.
File Name: readme.txt
Resource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt . File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zipResource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array. Resource Software Recommended: Axiom_Arachis2,url: thermofisher.com
Resource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt .
File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zip
Resource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array.
Resource Software Recommended: Axiom_Arachis2,url: thermofisher.com
Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf. File Name: SD02_core_RILs_SNPs_AxiomArachis2.vcf.zipResource Description: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf Core SNP set used to characterize the RIL population and progenitors.
Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf.
File Name: SD02_core_RILs_SNPs_AxiomArachis2.vcf.zip
Resource Description: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf Core SNP set used to characterize the RIL population and progenitors. DOI: 10.15482/USDA.ADC/1522387 Citation: de Blas, Francisco J.; Massa, Alicia N.; Arias, Renee S. (2021). Data from: Genetic mapping and QTL analysis for peanut smut resistance. Ag Data Commons. doi.org (Downloaded 2026-06-28)
For more information about this dataset contact: Renee Arias: Renee.Arias@usda.gov or Alicia Massa: Alicia.Massa@usda.gov
Resources in this dataset:
Resource Title: RILs of the mapping population. File Name: RIL_population.JPG
Resource Title: RILs of the mapping population.
File Name: RIL_population.JPG
Resource Title: Data Dictionary. File Name: readme.txt
Resource Title: Data Dictionary.
File Name: readme.txt
Resource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt . File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zipResource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array. Resource Software Recommended: Axiom_Arachis2,url: thermofisher.com
Resource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt .
File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zip
Resource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array.
Resource Software Recommended: Axiom_Arachis2,url: thermofisher.com
Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf. File Name: SD02_core_RILs_SNPs_AxiomArachis2.vcf.zipResource Description: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf Core SNP set used to characterize the RIL population and progenitors.
Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf.
File Name: SD02_core_RILs_SNPs_AxiomArachis2.vcf.zip
Resource Description: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf Core SNP set used to characterize the RIL population and progenitors. DOI: 10.15482/USDA.ADC/1522387 Citation: de Blas, Francisco J.; Massa, Alicia N.; Arias, Renee S. (2021). Data from: Genetic mapping and QTL analysis for peanut smut resistance. Ag Data Commons. doi.org (Downloaded 2026-06-28)
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