ersilia-os/hiv-covid-cidrz

Country-wide analysis of HIV treatment in Zambia before and during COVID-19 waves, based on the SmartCare database, with CIDRZ. # HIV treatment during COVID in Zambia This repository contains code for the analysis of country-wide data on HIV treatment in Zambia prior and post-COVID times. ## Background The goal of this project is to identify the potential effect of COVID-19 waves in Zambia on HIV treatment. A large-scale chunk of the Zambia's SmartCare database was pulled, containing viral load data across the country from the period 2017-2023. This work is done in collaboration with Jake Pry (CIDRZ). ## Analysis ### Bootstraping large-scale mixed effects logistic regression #### Variables ##### Covariates * XXX * XXX * XXX ##### Outcome variables * Viral load (`vl`): 1: <60, 2: <200, 3: <1000, 4: ≥1000 * CD4 (`cd4`): 1: <100, 2: <350, 3: <500, 4: ≥500 * Retention (``): * Death (`death`): 0, 1 ## About the Ersilia Open Source Initiative The Ersilia Open Source Initiative is a tech-nonprofit organization fueling sustainable research in the Global South. Ersilia's main asset is the Ersilia Model Hub, an open-source repository of AI/ML models for antimicrobial drug discovery.