hatagommha-hub/Lake-Chamo-Network-Resilience

# Lake-Chamo-Network-Resilience # Lake Chamo Network Resilience Framework R code for the paper: *"Network Destabilization and Ecological Memory as Early Warning Signals for Algal Blooms in a Hypereutrophic Tropical Lake: A Framework for Lake Chamo, Ethiopia"* --- ## Authors - Habtamu Tadesse - Kassahun Atalaya - Gemamaw Tesfaye - Gashaw Tesfaye **Affiliation:** Ethiopian Institue of Agricultural Research, National Fisheries ans Aquatic Life Research Center --- ## Repository Contents | File | Description | |------|-------------| | `lake_chamo_analysis.R` | Complete R code for network analysis, keystone species identification, eco-network energy calculation, and satellite NDVI validation | --- ## Requirements - **R version:** 4.0 or higher - **Required R packages:** - `igraph` - Network construction and analysis - `terra` - Raster processing - `sf` - Spatial data handling - `ggplot2` - Visualization - `tidyterra` - ggplot2 for rasters - `rstac` - Access satellite data - `dplyr` - Data manipulation - `tidyr` - Data reshaping - `patchwork` - Combining plots - `RColorBrewer` - Color palettes - `ggspatial` - Scale bars and north arrows - `Hmisc` - Correlation matrices To install all packages at once: ```r install.packages(c("igraph", "terra", "sf", "ggplot2", "tidyterra", "rstac", "dplyr", "tidyr", "patchwork", "RColorBrewer", "ggspatial", "Hmisc"))