Comparative genomics workflow and analysis of 313 East African Staphylococcus aureus isolates: end-to-end pipeline from SRA download, QC, assembly, annotation, phylogenomics, MLST, resistome, virulome, mobile genetic elements, and pangenome analysis.
# staphylococcus-aureus-east-africa-genomics
Comparative genomics workflow and analysis of 313 East African Staphylococcus aureus isolates: end-to-end pipeline from SRA download, QC, assembly, annotation, phylogenomics, MLST, resistome, virulome, mobile genetic elements, and pangenome analysis.