rorygibb/cchf_uganda

Scripts, data and key outputs from Uganda/Africa-wide CCHF risk modelling analysis # Understanding the epidemiology and ecology of CCHF in Uganda Repository contains scripts, data and key outputs from Uganda/Africa-wide CCHF risk modelling analysis. Scripts to run all models and produce figures: ↳ scripts Datasets used in the analysis: ↳ data → cchf_brt [CCHF occurrence data and spatial predictors for exposure model] ↳ data → chelsa_climatologies [Africa bioclimatic variables from CHELSA] ↳ data → host_occurrences [Geolocated mammal host occurrences] ↳ data → ndvi_copernicus [Africa long-term NDVI variables] ↳ data → project_shapefiles [Africa and Uganda shapefiles] ↳ data → tick_occurrences [Geolocated tick occurrences] Summary modelling outputs: ↳ output → cchf_exposure_map [mean and SD of BRT ensemble prediction of CCHF exposure risk] ↳ output → tick_host_suitability [Uganda-specific and Africa-wide ensemble mean predictions of tick/mammal suitability]