Samadou-Tchakondo/candida-prevalence-species-agreement

A reproducible epidemiological and statistical analysis project investigating the prevalence, species distribution, and diagnostic agreement of Candida infections among female sex workers in Lomé, Togo, using R, R Markdown, and reproducible data analysis workflows. # Prevalence, Species Distribution, and Diagnostic Agreement of Candida Infections Among Female Sex Workers in Lomé, Togo ## Overview This project presents an epidemiological analysis of Candida infections among female sex workers in Lomé, Togo. The analysis includes: - prevalence estimation, - species distribution, - diagnostic agreement analysis, - statistical summaries, - reproducible reporting using R Markdown. ## Project Structure - `data/` : raw and processed datasets - `output/` : generated figures and plots and exported results and tables - `script/` : additional R scripts - `.Rmd` : reproducible analysis document - `.html` : rendered scientific report ## Software - R - RStudio - tidyverse - epiR - irr - caret - knitr - rmarkdown ## Author Samadou Tchakondo MSc Biostatistics & Epidemiology SRM Institute of Science and Technology ORCID: orcid.org ## License MIT License