Supporting data and code for the study "Rapid Intra-host Diversification and Evolution of SARS-CoV-2 in Advanced HIV Infection" (2024) by Ko & Radecki et al.
See the GitHub for demo of SGS and haplotype generation using example data from the study.
Raw sequencing data are deposited at PRJNA1055920.
READMEs are available within individual folders and releases.