lydiakirsche/urban-ethiopian-children-microbiome: Version 1.0.0

This release provides the microbiome analysis pipelines supporting the manuscript: Gut microbial signatures expose the westernized lifestyle of urban Ethiopian children. The release includes: R Markdown workflow for QIIME2-based 16S rRNA gene sequencing analysis R Markdown workflow for shotgun metagenomic taxonomic and functional profiling The pipelines were used to analyse fecal microbiome data from 207 urban Ethiopian children aged 2–5 years living in Adama, Ethiopia. This version is archived on Zenodo and assigned a DOI for citation.