This dataset contains spatially continuous raster predictions of soil bacterial diversity across Sub-Saharan Africa, derived from Bayesian hierarchical models fitted to 16S rRNA amplicon sequencing data from 810 soil samples spanning 9 countries (Benin, Botswana, Côte d'Ivoire, Kenya, Mozambique, Namibia, South Africa, Zambia, and Zimbabwe), reprocessed from BioProject PRJNA807934.
Diversity is quantified using Hill numbers (q = 0, q = 1, q = 2) and log-evenness (logE). Each index is provided as two layers: the posterior predictive mean and the 90% posterior predictive interval (PPI), reflecting full model uncertainty.
Files:
pred_mean_D0.tif: Mean predicted species richness (q = 0, ASVs)
pred_mean_D1.tif: Mean predicted Shannon diversity (q = 1)
pred_mean_D2.tif: Mean predicted Simpson diversity (q = 2)
pred_mean_logE.tif: Mean predicted log-evenness
pred_mean_D0_even.tif: Mean predicted richness-based evenness
pred_ppi90_D0.tif: 90% PPI half-width, species richness
pred_ppi90_D1.tif: 90% PPI half-width, Shannon diversity
pred_ppi90_D2.tif: 90% PPI half-width, Simpson diversity
pred_ppi90_logE.tif: 90% PPI half-width, log-evenness
pred_ppi90_D0_even.tif: 90% PPI half-width, richness-based evenness
Raster specifications: CRS: EPSG:4326 (WGS 84) Resolution : 0.05° (~5 km at the equator) Format: GeoTiff Coverage: Sub-Saharan Africa
The underlying statistical model uses a Student-t likelihood Bayesian hierarchical model with country-level random effects, fitted in Stan via CmdStanR. Predictors include clay content, aridity, soil organic carbon, pH, and vegetation greenness (MODIS EVI2). These data support the Africa Soil Diversity Atlas (
ediman-sda.share.connect.po…) and the associated manuscript currently under review.
Source sequencing data: NCBI BioProject PRJNA807934.