This is a replication dataset for the manuscript titled: "Integrated surveillance in Kilifi reveals continued SARS-CoV-2 circulation and immune escape of emerging JN.1 sub-lineages post pandemic
This study reveals continued circulation of SARS-CoV-2 in the Kenyan population in waves across the year peaking between November 2024 and February 2026 in Kilifi. We performed pseudovirus neutralization assays against locally circulating lineages LF.7 and MV.1 and global lineages XEC.4, LP.8.1 and XFG which was predominant between November 2024 and March 2026.