Logo Lanfrica

Revision and reannotation of the Halomonas elongata DSM 2581 T genome

Type de record:

paperdataset
Créateur:
PfeBagAlfZam
Éditeur:
MaxBitBAMCom
Éditeur:
CCSDWILEY
Hôte:avatar
International audience The genome of the Halomonas elongata type strain DSM 2581, an industrial producer, was reevaluated using the Illumina HiSeq2500 technology. To resolve duplication-associated ambiguities, PCR products were generated and sequenced. Outside of duplications , 72 sequence corrections were required, of which 24 were point mutations and 48 were indels of one or few bases. Most of these were associated with polynu-cleotide stretches (poly-T stretch overestimated in 19 cases, poly-C underestimated in 15 cases). These problems may be attributed to using 454 technology for original ge-nome sequencing. On average, the original genome sequence had only one error in 56 kb. There were 23 frameshift error corrections in the 29 protein-coding genes affected by sequence revision. The genome has been subjected to major reannotation in order to substantially increase the annotation quality. K E Y W O R D S frameshift, genome annotation, genome sequencing, Halomonas elongata, halophilic bacteria, sequence revision

Tags

sequence revisionhalophilic bacteriaHalomonas elongatagenome sequencinggenome annotationframeshift[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM][SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]

Licenses

http://creativecommons.org/licenses/by/info:eu-repo/semantics/OpenAccess

Similaires

The hyper-diverse ant genus Tetramorium Mayr (Hymenoptera, Formicidae) in the Malagasy region ‑ taxonomic revision of the T. naganum, T. plesiarum, T. schaufussii, and T. severini species groups

AceRNorth/Ac-DSM-2-release: Ac(DSM)2 release

Codes used in the article "First release of a genetically modified strain of the malaria mosquito in

Figure 48 from: Hita Garcia F, Fisher B (2014) The hyper-diverse ant genus Tetramorium Mayr (Hymenoptera, Formicidae) in the Malagasy region ‑ taxonomic revision of the T. naganum, T. plesiarum, T. schaufussii, and T. severini species groups. ZooKeys 413: 1-170. https://doi.org/10.3897/zookeys.413.7172

Figure 4 from: Hita Garcia F, Fisher B (2014) The hyper-diverse ant genus Tetramorium Mayr (Hymenoptera, Formicidae) in the Malagasy region ‑ taxonomic revision of the T. naganum, T. plesiarum, T. schaufussii, and T. severini species groups. ZooKeys 413: 1-170. https://doi.org/10.3897/zookeys.413.7172

Figure 41 from: Hita Garcia F, Fisher B (2014) The hyper-diverse ant genus Tetramorium Mayr (Hymenoptera, Formicidae) in the Malagasy region ‑ taxonomic revision of the T. naganum, T. plesiarum, T. schaufussii, and T. severini species groups. ZooKeys 413: 1-170. https://doi.org/10.3897/zookeys.413.7172

The Revision of the Chokwe New Testament