Zoonotic viruses represent a significant threat to human health, underscoring the critical need to understand their biology within natural reservoir hosts. Traditional laboratory infection models are often insufficient for this purpose, necessitating a shift towards more ecologically realistic approaches. This study advocates for the use of experimental infection models featuring authentic virus-host pairings, complemented by observational trap-and-release field studies. Such systems are shown to more effectively capture the intricate host-virus interactions that drive viral persistence and transmission within reservoirs, thereby providing crucial insights into spillover mechanisms to humans. The presented primary studies, integrated with findings from a mini-review, offer guidance on optimal strategies for investigating infection processes in natural hosts. A key unresolved question in the field pertains to the restricted geographic distribution of certain rodent-borne viruses, exemplified by Lassa virus, which primarily emerges in West Africa despite its reservoir host being broadly distributed across the African continent. Addressing such questions through advanced experimental models is paramount. Ultimately, a deeper understanding of these intimate virus-host interactions, particularly the identification of critical “choke points” in the viral life cycle, is essential for developing broad-spectrum antivirals and effective vaccines, moving beyond pathogen-specific treatments.