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SNP information for loci identified using Restriction-site-associated DNA sequencing in the Ugandan red colobus

Type de record:

dataset
Créateur:
RuiTin
Éditeur:
Dry
Hôte:avatar
The file contains the SNP information for the loci identified using Restriction-site-associated DNA sequencing in the Ugandan red colobus. The text contains the following information: Locus (number assign to the locus by the program STACKS); Position (position of the SNP); SNP (identifies the change of the base in the SNP position); Consensus sequence (consensus sequence for the locus); number of individuals (number of individuals where the locus has been genotyped). It also includes the genotypes for all the individuals. If the individual could not be genotyped a "-" will appear. Some loci present more than one SNP, in those cases, the SNP information will appear in consecutive rows. For example locus 4 has SNPs in positions 86 (row number 2 in the table) and 89 (row number 3 in the table). In those cases the genotypes for the individuals always show the complete genotype. Heterozygotes are indicated with a "/". For example A/G is heterozygote for 1 SNP, CA/GG is heterozygote for 2 SNPs, GA/GG is heterozygote for 1 SNP out of 2.

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Tags

Conservation GeneticsGenomics/ProteomicsMammalsPopulation Genetics - EmpiricalUgandaProcolobus rufomitratus tephrosceles

Licenses

Creative Commons Zero v1.0 Universalhttps://creativecommons.org/publicdomain/zero/1.0/legalcode

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