Background
The need for utilizing renewable resources to meet the future demand for fuel and other value added products has increased the attention on lignocellulosic wastes. Lignocelluloses are degraded by cellulase and other lignocellulolytic enzymes produced by fungi and bacteria. Mutagenic agents have been used to achieve improvement of these strains. There is however, paucity of data on the effect of these mutagenic agents on the structure and function of cellulase genes. The aim of this study was to carry out a structural analysis on selected cellulase genes obtained from ultraviolet light mutated
Aspergillus niger
.
Methods
Fungi were isolated from decomposing wood wastes. They were genotyped by amplifying the internally transcribed spacer (ITS) regions on their DNA, sequencing the amplicons and analyzing the sequences. They were genetically modified for enhanced cellulase production using ultraviolet rays. RNA of the mutated
A. niger
was reverse transcribed to complementary DNA (cDNA). The selected genes; aepI, aceI, cbhI and a laccase gene, Lacc1 were amplified and sequenced. The sequences were aligned and compared with referenced sequences which included those of
Trichoderma reesei
and
Phanerochaete chrysosporium
. The sequences were also translated into amino acid and in‐silico X‐ray crystallography structure of the active site of the enzyme was constructed using MEGA5 and JPred version of Jalview softwares.
Results
Bioinformatics analysis of the sequence of the cbh I gene of the
A. niger
mutant showed that it's enzyme had strong similarity with compared industrially beneficial fungi;
Trichoderma reesei
and
Phanerochaete chrysosporium
. Amino acid changes occurred between the 8
th
to the 92
nd
position on the chain‐A of the enzyme. Amino acids residues in its active site had low hydropathy index. Predicted structure of cellulase from
A. niger
mutant revealed that alteration occurred in the β‐pleated sheets of the enzyme.
Conclusion
Genetic modification of
Aspergillus niger
resulted in enhanced cellulase enzyme activity.
Support or Funding Information
Central Research Laboratory, College of Medicine, University of Lagos