Bayesian tree with timescale of 56 HIV-1 C pol sequences from Senegal.

Domain:

healthcare

Record type:

paper

Creator:

MatNafNicDen

Host:

Maximum clade credibility tree with time scale obtained with BEAST using 1,011 nucleotide sites of pol gene sequences (nucleotides 2,253–3,263 of HXB2 coordinates) from 56 HIV-1 subtype C isolates from Senegal. This tree is obtained using the relaxed uncorrelated lognormal molecular clock model and moderately informative substitution rate prior (Normal: 2.5×10⁻³,7.5×10⁻⁴). Clades with posterior probabilities ≥95% are indicated by diamonds. MSM isolates are colored in red.

Visit

figshare.com

Licenses

CC BY 4.0

Bayesian skyride plot of HIV-1 C demographic growth in Senegal using 56 pol sequences.

Estimates of HIV-1 C effective number of infections (N_e) over time from 56 Sene

Maximum likelihood phylogenetic tree constructed from 56 HIV-1 C pol sequences from Senegal and 121 close relatives.

Detailed maximum likelihood (PhyML) phylogenetic tree constructed using 1,011 nucleotide sites of

Maximum likelihood phylogenetic tree based on 1,981 HIV-1 subtype C pol (∼1,000 pb) sequences.

Sequences were sampled at different countries from the east (n = 352), central (n =

Bayesian tree with timescale of 56 HIV-1 C <i>pol</i> sequences from Senegal.

Domain:

Record type:

Visit

Tags

Licenses

Similar

Bayesian skyride plot of HIV-1 C demographic growth in Senegal using 56 <i>pol</i> sequences.

Maximum likelihood phylogenetic tree constructed from 56 HIV-1 C <i>pol</i> sequences from Senegal and 121 close relatives.

Maximum likelihood phylogenetic tree based on 1,981 HIV-1 subtype C <i>pol</i> (∼1,000 pb) sequences.