Maximum likelihood phylogenetic tree based on 1,981 HIV-1 subtype C <i>pol</i> (∼1,000 pb) sequences.
Domain:
healthcareRecord type:
dataset
Creator:
EdsGon
Host:
Sequences were sampled at different countries from the east (n = 352), central (n = 53) and southern (n = 1,576) African regions shown in Table 1. The color of branches represents the geographic region from where the subtype C sequences originated, according to the map given in the figure. The boxes highlight the position of the major east African subtype C lineages. The tree was rooted using HIV-1 subtype A1 and D reference sequences (black branches). Horizontal branch lengths are drawn to scale with the bar at the bottom indicating nucleotide substitutions per site.
Similar
Maximum likelihood phylogenetic tree constructed from 56 HIV-1 C <i>pol</i> sequences from Senegal and 121 close relatives.Bayesian tree with timescale of 56 HIV-1 C <i>pol</i> sequences from Senegal.Maximum-likelihood phylogenetic tree of nucleotide sequences from SINV genotypeBayesian skyride plot of HIV-1 C demographic growth in Senegal using 56 <i>pol</i> sequences.Maximum likelihood phylogenetic analysis of partial CHIKV E1 gene sequences.Phylogenetic tree analysis of the Cape Verde HIV-2 <i>pol</i> region samples (black circles and squares).