Logo Lanfrica
  • Home
  • Atlas
  • Insights
  • Docs
  • Sign in

© 2026 Lanfrica. All rights reserved. All copyrights of the resources shown on the Lanfrica website belong to the original copyright holders, unless explicitly stated otherwise.

Replication Data for: Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya

Domain:

healthcare

Record type:

dataset
Creator:
Otieno, James RichardNok
Editor:
Otieno, James RichardNok
Publisher:
Har
Host:avatar

The data is from an on-going study aimed at understanding the epidemiology and disease burden of RSV-associated pneumonia cases in Kilifi. This report details the evolutionary dynamics of RSV-A genotype in Kilifi. Respiratory swab samples (combined nasopharyngeal and oropharyngeal) were collected from January 2000 to December 2012 from: (i) LRTI cases for children <5 years admitted to Kilifi County Hospital (KCH) collected over the period from 2000 to 2012 (3, 24), (ii) KCH outpatient presentations for children <5 years with acute respiratory infection (ARI) from April to August 2002 (25, 26), and (iii) the Kilifi RSV birth cohort (KBC) ARI cases identified between January 2002 to August 2003. The samples were screened for RSV and G-gene sequenced (RSV positives) using the Sanger method. Also included is a global RSV-A contemporenous comparison sequence dataset used in the analyses.

Data Availability GenBank accession numbers. The newly generated sequences analyzed here have been deposited in GenBank under accession numbers KT765213 to KT765836. The previously sequenced and reported RSV-A sequences from Kilifi added to this analysis had been archived in GenBank under accession numbers AY524573 to AY524663 and AY660667 to AY660684.

Visit

doi.orgdataverse.harvard.edu

Languages

Swahili, Coastal

Tags

Medicine, Health and Life SciencesRespiratory Syncytial VirusGenetic DiversityEvolutionary DynamicsG ProteinPhylogenetic Analysis

Licenses

info:eu-repo/semantics/openAccessCreative Commons Zero v1.0 Universalhttps://creativecommons.org/publicdomain/zero/1.0/legalcode

Similar

Replication Data for: Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17Replication Data for: Respiratory Syncytial Virus genotype BA in Kilifi, Kenya: evolutionary dynamics, 15 years onReplication Data for: Drivers of respiratory syncytial virus seasonal epidemics in children under 5 years in Kilifi, coastal KenyaGenomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17Replication Data for: Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010-2015Replication Data for: Respiratory Syncytial Virus Seasonality in Three Epidemiological Zones of Kenya.

Replication Data for: Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17

Replication datasets of the KHDSS RSVB genomes paper. This dataset includes, excel datashee

Replication Data for: Respiratory Syncytial Virus genotype BA in Kilifi, Kenya: evolutionary dynamics, 15 years on

This study is part of a longitudinal surveillance study established to understand the epide

Replication Data for: Drivers of respiratory syncytial virus seasonal epidemics in children under 5 years in Kilifi, coastal Kenya

This is a replication dataset for the manuscript titled: "Drivers of respi

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17

Abstract Respiratory syncytial virus (RSV) circulates worldwide

Replication Data for: Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010-2015

The data is from an on-going study aimed at understanding the epidemiology and disease bur

Replication Data for: Respiratory Syncytial Virus Seasonality in Three Epidemiological Zones of Kenya.

This is a replication dataset for the published article: "