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Replication Data for: Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010-2015

Domain:

healthcare

Record type:

dataset
Creator:
Otieno, James RichardNok
Editor:
Otieno, James RichardNok
Publisher:
Har
Host:avatar

The data is from an on-going study aimed at understanding the epidemiology and disease burden of RSV-associated pneumonia cases in Kilifi. This study was specifically interested in the introduction, spread and evolution of the novel RSV-A genotype ON1 in Kilifi. Respiratory swab samples (combined nasopharyngeal and oropharyngeal) were collected from September 2010 through August 2015 from children ages 1 day to <5 years admitted to Kilifi County Hospital (KCH) with syndromically defined severe or very severe pneumonia, screened for RSV and G-gene sequenced (RSV positives) using the Sanger method. Also included is are two global comparison sequence datasets used in the analyses: (1) RSV-A genotype ON1 contemporenous sequence dataset, and (2) RSV-B genotype BA sequences collected between 1998 and 2006.

Data Availability5> The sequences published in this article (also uploaded here) have been deposited in GenBank (accession nos. KX453303–KX453534); previously reported sequences from Kilifi added to this analysis have also been deposited in GenBank (accession nos. KF587911–KF588014) (13).

Visit

doi.orgdataverse.harvard.edu

Languages

Swahili, Coastal

Tags

Medicine, Health and Life Sciences

Licenses

info:eu-repo/semantics/restrictedAccessCreative Commons Zero v1.0 Universalhttps://creativecommons.org/publicdomain/zero/1.0/legalcode

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