The data are supplied in the Multisample Variant Format (Pease and Rosenzweig, 2015). A complete suite of tools for processing MVF files is available on github at
github.com. Each file contains a full-chromosome alignment of computationally phased haplotypes for 23 samples of A. arabiensis, A. quadriannulatus, and A. christyi (outgroup); haplotypes are identified by ".A" or ".B" appended to the sample ID. The sample key (SampleCode.txt) is also included.