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SNP Data Set of Senegalese Sorghum in the USDA-NPGS GRIN

Domaine:

agriculture

Type de record:

dataset
Créateur:
Faye, JacquesMaina, FannaHu, ZhenbinFonceka, Daniel
Éditeur:
Dry
Hôte:avatar
The file contains 213,916 GBS-SNPs obtained using genotyping-by-sequencing on the Senegalese sorghum accessions in the USDA-NPGS GRIN. Single-end sequence reads obtained from Illumina sequencing HiSeq 2500 were processed with the TASSEL 5 GBS v2 pipeline and sequence tags were aligned to the sorghum reference genome, BTx623 for SNP discovery. Only SNPs with < 20% missing data, minor allele frequency MAF > 0.01, and biallelic SNPs are present in this data set.

Tags

Local adaptationselective sweepsgenomicsdrought toleranceSenegalGambiaMauritaniaSorghum bicolor

Licenses

Creative Commons Zero v1.0 Universalhttps://creativecommons.org/publicdomain/zero/1.0/legalcode

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