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Versioned Archive and Review of Biotic Interactions and Taxon Names Found within urn:lsid:checklistbank.org:dataset:2017 hash://md5/9fc19128dda894cfd3d1367aeb297565

Domaine:

environment and energy

Type de record:

datasetsoftwarepaper
Créateur:
EltonNomerPreston
Éditeur:
Zenodo
Hôte:avatar
Life on Earth is sustained by complex interactions between organisms and their environment. These biotic interactions can be captured in datasets and published digitally. We present a review and archiving process for such an openly accessible digital interactions dataset of known origin and discuss its outcome. The dataset under review, named urn:lsid:checklistbank.org:dataset:2017, has fingerprint hash://md5/9fc19128dda894cfd3d1367aeb297565, is 108MiB in size and contains 13,123 interactions with 2 unique types of associations (e.g., hasHost) between 3,739 primary taxa (e.g., Helicoverpa armigera) and 3,848 associated taxa (e.g., Undefined polyphagous). This report includes detailed summaries of interaction data, a taxonomic review from multiple catalogs, and an archived version of the dataset from which the reviews are derived.

Introduction

Data Review and Archive

Data review and archiving can be a time-consuming process, especially when done manually. This review report aims to help facilitate both activities. It automates the archiving of datasets, including Darwin Core archives, and is a citable backup of a version of the dataset. Additionally, an automatic review of species interaction claims made in the dataset is generated and registered with Global Biotic Interactions (J. H. Poelen, Simons, and Mungall 2014).

This review includes summary statistics about, and observations about, the dataset under review :

(misc?){ChecklistBankDataset2017, publisher = {Belgian Biodiversity Platform, Belspo}, address = {Brussels, Belgium}, version = {2026-06-01}, url = {afromoths.net, title = {Afromoths, online database of Afrotropical moth species (Lepidoptera)}, author = {{De Prins}, {Jurate} and {De Prins}, {Willy}}, year = 2026, month = 6} api.checklistbank.org 2026-06-06T18:01:50.549Z hash://md5/9fc19128dda894cfd3d1367aeb297565

Methods

The review is performed through programmatic scripts that leverage tools like Preston (Elliott et al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer (Salim and Poelen 2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024) combined with third-party tools like grep, mlr, tail and head.

Tools used in this review process
tool nameversion
preston0.11.1
elton0.16.11
nomer0.6.5
globinizer0.4.0
mlr6.0.0
jq1.6
yq4.25.3
pandoc3.1.6.1
duckdb1.3.1
mapserver7.6.4

The review process can be described in the form of the script below 1.

# get versioned copy of the dataset (size approx.  108MiB) under review 
elton pull urn:lsid:checklistbank.org:dataset:2017

# generate review notes
elton review urn:lsid:checklistbank.org:dataset:2017 \
 > review.tsv

# export indexed interaction records
elton interactions urn:lsid:checklistbank.org:dataset:2017 \
 > interactions.tsv

# export names and align them with the Catalogue of Life using Nomer 
elton names urn:lsid:checklistbank.org:dataset:2017 \
 | nomer append col \
 > name-alignment.tsv

or visually, in a process diagram.

Review Process Overview

You can find a copy of the full review script at check-data.sh. See also GitHub and Codeberg.

Results

In the following sections, the results of the review are summarized 2. Then, links to the detailed review reports are provided.

Files

An extensive list of files produced as part of the review process can be found in Appendix A. Review Files.

Archived Dataset

Note that data.zip file in this archive contains the complete, unmodified archived dataset under review.

Biotic Interactions

Biotic Interaction Data Model

In this review, biotic interactions (or biotic associations) are modeled as a primary (aka subject, source) organism interacting with an associate (aka object, target) organism. The dataset under review classified the primary/associate organisms with specific taxa. The primary and associate organisms The kind of interaction is documented as an interaction type.

The dataset under review, named urn:lsid:checklistbank.org:dataset:2017, has fingerprint hash://md5/9fc19128dda894cfd3d1367aeb297565, is 108MiB in size and contains 13,123 interactions with 2 unique types of associations (e.g., hasHost) between 3,739 primary taxa (e.g., Helicoverpa armigera) and 3,848 associated taxa (e.g., Undefined polyphagous).

An exhaustive list of indexed interaction claims can be found in gzipped csv, tsv, geopackage and parquet archives. To facilitate discovery, a preview of claims available in the gzipped html page at indexed-interactions.html.gz are shown below.

The exhaustive list was used to create the following data summaries below.

Sample of Indexed Interaction Claims
sourceTaxonNameinteractionTypeNametargetTaxonNamereferenceCitation
Agrionympha capensishasParasiteMesocomys pulchriceps CameronPrinsloo G. L. & Uys V. M. (Eds.), 2015, Insects of cultivated plants and natural pastures in Southern Africa. vol issue pages i–xiv, 1–785
Agrionympha capensishasHostUndefined MossesStaude H. S., Picker M. & Griffiths Ch., 2023, Southern African moths & their caterpillars. vol issue pages 1–464
Agrionympha fuscoapicellahasHostUndefined MossesStaude H. S., Picker M. & Griffiths Ch., 2023, Southern African moths & their caterpillars. vol issue pages 1–464
Agrionympha kroonellahasHostUndefined MossesStaude H. S., Picker M. & Griffiths Ch., 2023, Southern African moths & their caterpillars. vol issue pages 1–464
Most Frequently Mentioned Interaction Types (up to 20 most frequent)
interactionTypeNamecount
hasHost12605
hasParasite518
Most Frequently Mentioned Primary Taxa (up to 20 most frequent)
sourceTaxonNamecount
Helicoverpa armigera116
Thaumatotibia leucotreta103
Acherontia atropos97
Polyphagozerra coffeae90
Spodoptera littoralis80
Sesamia calamistis76
Coelonia fulvinotata69
Daphnis nerii67
Euproctis fasciata59
Agrius convolvuli56
Gonimbrasia petiveri55
Bunaea alcinoe54
Hippotion celerio52
Zeuzera pyrina50
Hippotion eson50
Ascotis reciprocaria49
Olene basalis46
Thysanoplusia orichalcea46
Choristoneura occidentalis45
Most Frequently Mentioned Associate Taxa (up to 20 most frequent)
targetTaxonNamecount
Undefined polyphagous213
Gossypium sp.154
Undefined Grasses141
Zea mays L.127
Acacia sp.125
Coffea sp.96
Vachellia karroo (Hayne) Banfi & Galasso91
Vachellia tortilis (Forssk.) Galasso & Banfi90
Ficus sp.75
Eucalyptus sp.74
Vachellia xanthophloea (Benth.) P.J.H. Hurter65
Schinus molle L.60
Ricinus communis L.60
Ipomoea batatas (L.) Lam.59
Alchornea cordifolia (Schumach. & Thonn.) Müll. Arg.58
Coffea arabica L.55
Acacia mearnsii De Wild.53
Pinus patula Schiede & Deppe52
Theobroma cacao L.51
Most Frequent Interactions between Primary and Associate Taxa (up to 20 most frequent)
sourceTaxonNameinteractionTypeNametargetTaxonNamecount
Daphnis neriihasHostNerium oleander L.9
Sesamia calamistishasHostZea mays L.9
Earias insulanahasHostGossypium sp.8
Haritalodes derogatahasHostGossypium sp.7
Agrius convolvulihasHostIpomoea batatas (L.) Lam.6
Thalassodes quadrariahasHostRicinus communis L.6
Busseola fuscahasHostZea mays L.6
Stomphastis thrausticahasHostJatropha curcas L.5
Pectinophora gossypiellahasHostGossypium sp.5
Crocidolomia pavonanahasHostBrassica oleracea L.5
Leucinodes laisalishasHostSolanum melongena L.5
Anomis flavahasHostGossypium sp.5
Earias biplagahasHostGossypium sp.5
Diparopsis castaneahasHostGossypium sp.5
Spodoptera littoralishasHostGossypium sp.5
Leucania loreyihasHostZea mays L.5
Cryptolectica bifasciatahasHostGossypium sp.4
Thaumatotibia leucotretahasHostCitrus sp.4
Thaumatotibia leucotretahasHostZea mays L.4

Interaction Networks

The figures below provide a graph view on the dataset under review. The first shows a summary network on the kingdom level, and the second shows how interactions on the family level. It is important to note that both network graphs were first aligned taxonomically using the Catalogue of Life. Please refer to the original (or verbatim) taxonomic names for a more original view on the interaction data.

Interactions on taxonomic kingdom rank as interpreted by the Catalogue of Life download svg Interactions on the taxonomic family rank as interpreted by the Catalogue of Life. download svg

You can download the indexed dataset under review at indexed-interactions.csv.gz. A tab-separated file can be found at indexed-interactions.tsv.gz

Geospatial Distribution

If geospatial information was extracted from the dataset under review, the map below will show their distribution. These maps were generated using MapServer (McKenna et al. 2025) tools configured via map configuration indexed-interactions.map :

MAP
  SIZE 1600 800
  EXTENT -180 -90 180 90
  PROJECTION
    "init=epsg:4326"
  END
  LAYER # MODIS WMS map from NASA
    NAME         "modis_nasa"
    TYPE         RASTER
    OFFSITE      0 0 0
    STATUS       ON
    CONNECTIONTYPE WMS
    CONNECTION "gibs.earthdata.nasa.gov?"

    METADATA
      "wms_srs" "EPSG:4326"
      "wms_name" "OSM_Land_Water_Map"
      "wms_server_version" "1.1.1"
      "wms_format" "image/jpeg"
    END
    CLASS
      STYLE
        COLOR        232 232 232
        OUTLINECOLOR 32 32 32
      END
    END
  END 
  LAYER
    NAME "indexed-interactions"
    TYPE POLYGON
    STATUS ON
    CONNECTIONTYPE OGR
    CONNECTION "indexed-interactions-h3.gpkg"
    DATA "indexed-interactions-h3"
    CLASS
      STYLE
        COLORRANGE 253.0 231.0 37.0 32.0 164.0 134.0
        DATARANGE NULL NULL
        RANGEITEM "log_number_of_records"
        OUTLINECOLOR 0 0 0
      END
    END
  END
END
Hexagonal grid cells indicate that interactions claims are available for selected geospatial area: light yellow means relatively fewer claims, dark green relatively more claims.

Associated data can be found in the geopackage files at indexed-interactions.gpkg for point data and indexed-interactions-h3.gpkg for data clustered in geospatial h3 hexagonals.

Learn more about the structure of this download at GloBI website, by opening a GitHub issue, or by sending an email.

Another way to discover the dataset under review is by searching for it on the GloBI website.

Taxonomic Alignment

As part of the review, all names are aligned against various name catalogs (e.g., col, ncbi, discoverlife, gbif, itis, wfo, mdd, tpt, pbdb, and worms). These alignments can help review name usage or aid in selecting of a suitable taxonomic name resource.

Sample of Name Alignments
providedNamerelationNameresolvedCatalogNameresolvedName
Abelmoschus esculentusHAS_ACCEPTED_NAMEcolAbelmoschus esculentus
Abelmoschus moschatusHAS_ACCEPTED_NAMEcolAbelmoschus moschatus
AberiaSYNONYM_OFcolDovyalis
AberiaHAS_ACCEPTED_NAMEcolAberia
Distribution of Taxonomic Ranks of Aligned Names by Catalog. Names that were not aligned with a catalog are counted as NAs. So, the total number of unaligned names for a catalog will be listed in their NA row.
resolvedCatalogNameresolvedRankcount
colNA245
colform1
colgenus802
colspecies6316
colsubgenus9
colsubspecies269
colsuperorder1
colvariety30
discoverlifeNA7574
gbifNA321
gbifform2
gbifgenus805
gbifspecies6249
gbifsubspecies263
gbifvariety54
itisNA5727
itisfamily1
itisgenus617
itisspecies1205
itissubgenus2
itissubspecies11
itisvariety13
mddNA7573
ncbiNA3672
ncbiclade2
ncbigenus760
ncbispecies3119
ncbisubgenus4
ncbisubspecies15
ncbivarietas5
pbdbNA7183
pbdbfamily1
pbdbgenus337
pbdbinfraorder1
pbdbspecies50
pbdbsubgenus1
pbdbsuborder1
pbdbsuperorder1
pbdbtribe1
pbdbunranked clade2
tptNA7565
tptgenus7
tptspecies1
wfoNA4244
wfoform1
wfogenus740
wfospecies2552
wfosubspecies42
wfovariety28
wormsNA6772
wormsgenus364
wormsspecies435
wormssubspecies7
wormssuperorder1
wormsvariety5
Name relationship types per catalog. Name relationship type "NONE" means that a name was not recognized by the associated catalog. "SAME_AS" indicates either a "HAS_ACCEPTED_NAME" or "SYNONYM_OF" name relationship type. We recognize that "SYNONYM_OF" encompasses many types of nomenclatural synonymies
resolvedCatalogNamerelationNamecount
colHAS_ACCEPTED_NAME6563
colSYNONYM_OF2106
colNONE254
discoverlifeNONE7587
gbifHAS_ACCEPTED_NAME7162
gbifSYNONYM_OF2619
gbifNONE330
itisHAS_ACCEPTED_NAME1698
itisNONE5739
itisSYNONYM_OF251
mddNONE7586
ncbiSAME_AS3707
ncbiNONE3681
ncbiSYNONYM_OF253
pbdbNONE7196
pbdbHAS_ACCEPTED_NAME396
pbdbSYNONYM_OF16
tptNONE7578
tptHAS_ACCEPTED_NAME8
wfoHAS_ACCEPTED_NAME2908
wfoSYNONYM_OF782
wfoHAS_UNCHECKED_NAME195
wfoNONE4253
wormsNONE6785
wormsHAS_ACCEPTED_NAME836
wormsSYNONYM_OF141
List of Available Name Alignment Reports
catalog namealignment results
colassociated names alignments report in gzipped html, csv, and tsv)
ncbiassociated names alignments report in gzipped html, csv, and tsv)
discoverlifeassociated names alignments report in gzipped html, csv, and tsv)
gbifassociated names alignments report in gzipped html, csv, and tsv)
itisassociated names alignments report in gzipped html, csv, and tsv)
wfoassociated names alignments report in gzipped html, csv, and tsv)
mddassociated names alignments report in gzipped html, csv, and tsv)
tptassociated names alignments report in gzipped html, csv, and tsv)
pbdbassociated names alignments report in gzipped html, csv, and tsv)
wormsassociated names alignments report in gzipped html, csv, and tsv)

Additional Reviews

Elton, Nomer, and other tools may have difficulties interpreting existing species interaction datasets. Or, they may misbehave, or otherwise show unexpected behavior. As part of the review process, detailed review notes are kept that document possibly misbehaving, or confused, review bots. An sample of review notes associated with this review can be found below.

First few lines in the review notes.
reviewDatereviewCommentTypereviewComment
2026-06-08T05:49:06Znotesource taxon name missing
2026-06-08T05:49:06Znotesource taxon name missing
2026-06-08T05:49:06Znotesource taxon name missing
2026-06-08T05:49:06Znotesource taxon name missing

In addition, you can find the most frequently occurring notes in the table below.

Most frequently occurring review notes, if any.
reviewCommentcount
source taxon name missing74520
target taxon name missing3

For additional information on review notes, please have a look at the first 500 Review Notes in html format or the download full gzipped csv or tsv archives.

GloBI Review Badge

As part of the review, a review badge is generated. This review badge can be included in webpages to indicate the review status of the dataset under review.

Picture of a GloBI Review Badge 3

Note that if the badge is green, no review notes were generated. If the badge is yellow, the review bots may need some help with interpreting the species interaction data.

GloBI Index Badge

If the dataset under review has been registered with GloBI, and has been succesfully indexed by GloBI, the GloBI Index Status Badge will turn green. This means that the dataset under review was indexed by GloBI and is available through GloBI services and derived data products.

Picture of a GloBI Index Badge 4

If you'd like to keep track of reviews or index status of the dataset under review, please visit GloBI's dataset index 5 for badge examples.

Discussion

This review and archive provides a means of creating citable versions of datasets that change frequently. This may be useful for dataset managers, including natural history collection data managers, as a backup archive of a shared Darwin Core archive. It also serves as a means of creating a trackable citation for the dataset in an automated way, while also including some information about the contents of the dataset.

This review aims to provide a perspective on the dataset to aid in understanding of species interaction claims discovered. However, it is important to note that this review does not assess the quality of the dataset. Instead, it serves as an indication of the open-ness6 and FAIRness (Wilkinson et al. 2016; Trekels et al. 2023) of the dataset: to perform this review, the data was likely openly available, Findable, Accessible, Interoperable and Reusable. The current Open-FAIR assessment is qualitative, and a more quantitative approach can be implemented with specified measurement units.

This report also showcases the reuse of machine-actionable (meta)data, something highly recommended by the FAIR Data Principles (Wilkinson et al. 2016). Making (meta)data machine-actionable enables more precise procesing by computers, enabling even naive review bots like Nomer and Elton to interpret the data effectively. This capability is crucial for not just automating the generation of reports, but also for facilitating seamless data exchanges, promoting interoperability.

Acknowledgements

We thank the many humans that created us and those who created and maintained the data, software and other intellectual resources that were used for producing this review. In addition, we are grateful for the natural resources providing the basis for these human and bot activities. Also, thanks to github.com for helping improve the layout of the review tables.

Author contributions

Nomer was responsible for name alignments. Elton carried out dataset extraction, and generated the review notes. Preston tracked, versioned, and packaged, the dataset under review.

Appendix A. Review Files

The following files are produced in this review:

filenamedescription
biblio.biblist of bibliographic reference of this review
check-dataset.shdata review workflow/process as expressed in a bash script
data.zipa versioned archive of the data under review
HEADthe digital signature of the data under review
index.docxreview in MS Word format
index.htmlreview in HTML format
index.mdreview in Pandoc markdown format
index.pdfreview in PDF format
indexed-citations.csv.gzlist of distinct reference citations for reviewed species interaction claims in gzipped comma-separated values file format
indexed-citations.html.gzlist of distinct reference citations for reviewed species interactions claims in gzipped html file format
indexed-citations.tsv.gzlist of distinct reference citations for reviewed species interaction claims in gzipped tab-separated values format
indexed-interactions-col-family-col-family.svgnetwork diagram showing the taxon family to taxon family interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024)
indexed-interactions-col-kingdom-col-kingdom.svgnetwork diagram showing the taxon kingdom to taxon kingom interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024)
indexed-interactions.csv.gzspecies interaction claims indexed from the dataset under review in gzipped comma-separated values format
indexed-interactions.html.gzspecies interaction claims indexed from the dataset under review in gzipped html format
indexed-interactions.tsv.gzspecies interaction claims indexed from the dataset under review in gzipped tab-separated values format
indexed-interactions.parquetspecies interaction claims indexed from the dataset under review in Apache Parquet format
indexed-interactions.pngspecies interaction claims indexed from the dataset under review plotted on a map
indexed-interactions.mapmapserver configuration to plot species interaction claims indexed from the dataset under review on a map
indexed-interactions.gpkgspecies interaction claims indexed from the dataset under review in GeoPackage format
indexed-interactions-h3.gpkggeospatially clustered h3 species interaction claims indexed from the dataset under review in GeoPackage format
indexed-interactions-sample.csvlist of species interaction claims indexed from the dataset under review in gzipped comma-separated values format
indexed-interactions-sample.htmlfirst 500 species interaction claims indexed from the dataset under review in html format
indexed-interactions-sample.tsvfirst 500 species interaction claims indexed from the dataset under review in tab-separated values format
indexed-names.csv.gztaxonomic names indexed from the dataset under review in gzipped comma-separated values format
indexed-names.html.gztaxonomic names found in the dataset under review in gzipped html format
indexed-names.tsv.gztaxonomic names found in the dataset under review in gzipped tab-separated values format
indexed-names.parquettaxonomic names found in the dataset under review in Apache Parquet format
indexed-names-resolved-col.csv.gztaxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-col.html.gztaxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-col.tsv.gztaxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-col.parquettaxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-discoverlife.csv.gztaxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-discoverlife.html.gztaxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-discoverlife.tsv.gztaxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-discoverlife.parquettaxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-gbif.csv.gztaxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-gbif.html.gztaxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-gbif.tsv.gztaxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-gbif.parquettaxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-itis.csv.gztaxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-itis.html.gztaxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-itis.tsv.gztaxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-itis.parquettaxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-mdd.csv.gztaxonomic names found in the dataset under review aligned with the Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-mdd.html.gztaxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-mdd.tsv.gztaxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-mdd.parquettaxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-ncbi.csv.gztaxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-ncbi.html.gztaxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-ncbi.tsv.gztaxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-ncbi.parquettaxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-pbdb.csv.gztaxonomic names found in the dataset under review aligned with the Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-pbdb.html.gztaxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-pbdb.tsv.gztaxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-pbdb.parquettaxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-tpt.csv.gztaxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-tpt.html.gztaxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-tpt.tsv.gztaxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-tpt.parquettaxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-wfo.csv.gztaxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-wfo.html.gztaxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-wfo.tsv.gztaxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-wfo.parquettaxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-worms.csv.gztaxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format
indexed-names-resolved-worms.html.gztaxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-worms.tsv.gztaxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format
indexed-names-resolved-worms.parquettaxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-sample.csvfirst 500 taxonomic names found in the dataset under review in comma-separated values format
indexed-names-sample.htmlfirst 500 taxonomic names found in the dataset under review in html format
indexed-names-sample.tsvfirst 500 taxonomic names found in the dataset under review in tab-separated values format
interaction.svgdiagram summarizing the data model used to index species interaction claims
nanopub-sample.trigfirst 500 species interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014)
nanopub.trig.gzspecies interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014)
process.svgdiagram summarizing the data review processing workflow
prov.nqorigin of the dataset under review as expressed in rdf/nquads
review.csv.gzreview notes associated with the dataset under review in gzipped comma-separated values format
review.html.gzreview notes associated with the dataset under review in gzipped html format
review.tsv.gzreview notes associated with the dataset under review in gzipped tab-separated values format
review-sample.csvfirst 500 review notes associated with the dataset under review in comma-separated values format
review-sample.htmlfirst 500 review notes associated with the dataset under review in html format
review-sample.tsvfirst 500 review notes associated with the dataset under review in tab-separated values format
review.svga review badge generated as part of the dataset review process
zenodo.jsonmetadata of this review expressed in Zenodo record metadata

References

Elliott, Michael, Jorrit Poelen, Icaro Alzuru, Emilio Berti, and partha04patel. 2025. "Bio-Guoda/Preston: 0.10.5." Zenodo. https://doi.org/10.5281/zen….
ICZN. 1999. "International Code of Zoological Nomenclature." The International Trust for Zoological Nomenclature, London, UK. https://www.iczn.org/the-co….
Kuhn, Tobias, and Michel Dumontier. 2014. "Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data." In The Semantic Web: Trends and Challenges, edited by Valentina Presutti, Claudia d'Amato, Fabien Gandon, Mathieu d'Aquin, Steffen Staab, and Anna Tordai, 395–410. Cham: Springer International Publishing.
Kuhn, Tobias, Jorrit Poelen, and Katrin Leinweber. 2025. "Globalbioticinteractions/Elton: 0.15.1." Zenodo. https://doi.org/10.5281/zen….
McKenna, Jeff, Steve Lime, Thomas Bonfort, Jérome Boué, Howard Butler, Seth Girvin, Tom Kralidis, et al. 2025. "MapServer." Zenodo. https://doi.org/10.5281/zen….
Poelen, Jorrit H. (ed.). 2024. "Nomer Corpus of Taxonomic Resources Hash://Sha256/ B60c0d25a16ae77b24305782017b1a270b79b5d1746f832650 F2027ba536e276 Hash://Md5/17f1363a277ee0e4ecaf1b91c665e47e." Zenodo. https://doi.org/10.5281/zen….
Poelen, Jorrit H., James D. Simons, and Chris J. Mungall. 2014. "Global Biotic Interactions: An Open Infrastructure to Share and Analyze Species-Interaction Datasets." Ecological Informatics 24 (November): 148–59. https://doi.org/10.1016/j.e….
Poelen, Jorrit, Katja Seltmann, and Daniel Mietchen. 2024. "Globalbioticinteractions/Globinizer: 0.4.0." Zenodo. https://doi.org/10.5281/zen….
Salim, José Augusto, and Jorrit Poelen. 2025. "Globalbioticinteractions/Nomer: 0.5.15." Zenodo. https://doi.org/10.5281/zen….
Trekels, Maarten, Debora Pignatari Drucker, José Augusto Salim, Jeff Ollerton, Jorrit Poelen, Filipi Miranda Soares, Max Rünzel, Muo Kasina, Quentin Groom, and Mariano Devoto. 2023. "WorldFAIR Project (D10.1) Agriculture-related pollinator data standards use cases report." Zenodo. https://doi.org/10.5281/zen….
Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al. 2016. "The FAIR Guiding Principles for Scientific Data Management and Stewardship." Scientific Data 3 (1). https://doi.org/10.1038/sda….
  1. Note that you have to first get the data (e.g., via elton pull urn:lsid:checklistbank.org:dataset:2017) before being able to generate reviews (e.g., elton review urn:lsid:checklistbank.org:dataset:2017), extract interaction claims (e.g., elton interactions urn:lsid:checklistbank.org:dataset:2017), or list taxonomic names (e.g., elton names urn:lsid:checklistbank.org:dataset:2017)↩︎

  2. Disclaimer: The results in this review should be considered friendly, yet naive, notes from an unsophisticated robot. Please keep that in mind when considering the review results.↩︎

  3. Up-to-date status of the GloBI Review Badge can be retrieved from the GloBI Review Depot↩︎

  4. Up-to-date status of the GloBI Index Badge can be retrieved from GloBI's API↩︎

  5. At time of writing (2026-06-08) the version of the GloBI dataset index was available at https://globalbioticinterac…↩︎

  6. According to opendefinition.org: "Open data is data that can be freely used, re-used and redistributed by anyone - subject only, at most, to the requirement to attribute and sharealike."↩︎

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